Lots of options, and just as many opinions. I voted 2004r. No brainer to me. You will have to get it overhauled to suit your power level. I see you are in Phoenix. The Turbo Buick guys out there have Nick Micale. You should get with him and find out who does their trans(might be him not sure).
http://arizonagn.com/?page_id=86 I put my 2004r together and you could too if you are so inclined.
As pointed out, the trans bolts in place of the th350 by just moving the crossmember back to the th400 position. Uses the same drive shaft as the th350. That just leaves the tv cable and brackets.
You don't say what carb you are using but there are plenty of kits for many different carbs.
Check out
www.tvmadeez.com
On the left there is a box with a list of carbs. Click on yours.
And for a little tv how and why there is this
http://www.tvmadeez.com/article/index.php
Let us know what you come up with.